Microsatellite development for the endangered Yangtze sturgeon (Acipenser dabryanus Duméril, 1869) using 454 sequencing
Identifieur interne : 000340 ( Main/Exploration ); précédent : 000339; suivant : 000341Microsatellite development for the endangered Yangtze sturgeon (Acipenser dabryanus Duméril, 1869) using 454 sequencing
Auteurs : Q. Zeng [République populaire de Chine] ; H. Ye [République populaire de Chine] ; A. Ludwig [Allemagne] ; Z. Wang [République populaire de Chine] ; Y. Zhang [République populaire de Chine] ; Z. Peng [République populaire de Chine]Source :
- Journal of Applied Ichthyology [ 0175-8659 ] ; 2013-12.
Abstract
The Yangtze sturgeon (Acipenser dabryanus) is an endemic species in China. Using 454 sequencing, eight polymorphic tri‐, tetra‐, penta‐, and hexanucleotide microsatellite loci were isolated in this study. The raw sequence data from a one‐eighth run of 454 sequencings were 38.0 Mbp containing 94 222 reads/sequences. Of 80 microsatellite loci, only eight loci were polymorphic in a population of 30 individuals. The number of alleles per locus ranged from 4 to 14 (mean 7.62), and the observed heterozygosities varied between 0.46 and 0.88 (mean 0.74). Cross amplification was tested in congeneric species Acipenser sturio and Acipenser sinensis. These new microsatellite markers will be useful for further studies on genetic variation, parentage analysis, and conservation management for this critically endangered species.
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DOI: 10.1111/jai.12278
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Ludwig</name><affiliation wicri:level="3"><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Evolutionary Genetics, Institute for Zoo and Wildlife Research, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Z" sort="Wang, Z" uniqKey="Wang Z" first="Z." last="Wang">Z. Wang</name><affiliation wicri:level="1"><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, Southwest University School of Life Science, Chongqing</wicri:regionArea><wicri:noRegion>Chongqing</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Y" sort="Zhang, Y" uniqKey="Zhang Y" first="Y." last="Zhang">Y. Zhang</name><affiliation wicri:level="1"><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, Southwest University School of Life Science, Chongqing</wicri:regionArea><wicri:noRegion>Chongqing</wicri:noRegion></affiliation></author><author><name sortKey="Peng, Z" sort="Peng, Z" uniqKey="Peng Z" first="Z." last="Peng">Z. Peng</name><affiliation wicri:level="1"><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, Southwest University School of Life Science, Chongqing</wicri:regionArea><wicri:noRegion>Chongqing</wicri:noRegion></affiliation><affiliation></affiliation><affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j">Journal of Applied Ichthyology</title><title level="j" type="abbrev">J. Appl. Ichthyol.</title><idno type="ISSN">0175-8659</idno><idno type="eISSN">1439-0426</idno><imprint><publisher>Blackwell Publishing Ltd</publisher><date type="published" when="2013-12">2013-12</date><biblScope unit="volume">29</biblScope><biblScope unit="issue">6</biblScope><biblScope unit="page" from="1219">1219</biblScope><biblScope unit="page" to="1221">1221</biblScope></imprint><idno type="ISSN">0175-8659</idno></series><idno type="istex">33C4D9F37F952FCB180F4D9F4E0F26928311F8CD</idno><idno type="DOI">10.1111/jai.12278</idno><idno type="ArticleID">JAI12278</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0175-8659</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract">The Yangtze sturgeon (Acipenser dabryanus) is an endemic species in China. Using 454 sequencing, eight polymorphic tri‐, tetra‐, penta‐, and hexanucleotide microsatellite loci were isolated in this study. The raw sequence data from a one‐eighth run of 454 sequencings were 38.0 Mbp containing 94 222 reads/sequences. Of 80 microsatellite loci, only eight loci were polymorphic in a population of 30 individuals. The number of alleles per locus ranged from 4 to 14 (mean 7.62), and the observed heterozygosities varied between 0.46 and 0.88 (mean 0.74). Cross amplification was tested in congeneric species Acipenser sturio and Acipenser sinensis. These new microsatellite markers will be useful for further studies on genetic variation, parentage analysis, and conservation management for this critically endangered species.</div></front></TEI><affiliations><list><country><li>Allemagne</li><li>République populaire de Chine</li></country><region><li>Berlin</li></region><settlement><li>Berlin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Zeng, Q" sort="Zeng, Q" uniqKey="Zeng Q" first="Q." last="Zeng">Q. Zeng</name></noRegion><name sortKey="Peng, Z" sort="Peng, Z" uniqKey="Peng Z" first="Z." last="Peng">Z. Peng</name><name sortKey="Wang, Z" sort="Wang, Z" uniqKey="Wang Z" first="Z." last="Wang">Z. Wang</name><name sortKey="Ye, H" sort="Ye, H" uniqKey="Ye H" first="H." last="Ye">H. Ye</name><name sortKey="Ye, H" sort="Ye, H" uniqKey="Ye H" first="H." last="Ye">H. Ye</name><name sortKey="Zhang, Y" sort="Zhang, Y" uniqKey="Zhang Y" first="Y." last="Zhang">Y. Zhang</name></country><country name="Allemagne"><region name="Berlin"><name sortKey="Ludwig, A" sort="Ludwig, A" uniqKey="Ludwig A" first="A." last="Ludwig">A. Ludwig</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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